How does the MSc work?

The MSC then uses the selected formula or formulas, retrieves one or multiple possible structures from a .mol file, an .sdf file, a MassHunter compound database (PCD, PCDL), PubChem (web) or ChemSpider (web) and scores how well each candidate structure correlates with the MS/MS spectrum.

How do I install the MSC Software?

1Run MSC.msito install the MSC software. The files are installed in C:Program FilesAgilentMassHunterWorkstation MSC. 2Copy example data (.cef files) from the Datafolder on the installation CD to a location of choice on your hard drive. The default location is C:Program FilesAgilentMassHunterWorkstation MSCData.

How do you use MSc in MS analysis?

MSC can be used to confirm a proposed structure for a compound with higher confidence by correlating, as much as possible, fragment ions in the MS/MS spectrum with plausible substructures. The correlation score gives an indication how likely the MS/MS spectrum supports the identity of the proposed structure.

How do I start the masshunter MSc?

Start the MassHunter MSC in one of two ways: •Double-click the desktop icon, or •Click Start > All Programs > Agilent > Molecular Structure Correlator > Molecular Structure Correlator. The MSC application has two main panes.

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Frequently Asked Questions

How does the MSc work?

The MSC then uses the selected formula or formulas, retrieves one or multiple possible structures from a .mol file, an .sdf file, a MassHunter compound database (PCD, PCDL), PubChem (web) or ChemSpider (web) and scores how well each candidate structure correlates with the MS/MS spectrum.
How do I install the MSC Software?

1Run MSC.msito install the MSC software. The files are installed in C:\Program Files\Agilent\MassHunter\Workstation\ MSC. 2Copy example data (.cef files) from the Datafolder on the installation CD to a location of choice on your hard drive. The default location is C:\Program Files\Agilent\MassHunter\Workstation\ MSC\Data.
How do you use MSc in MS analysis?

MSC can be used to confirm a proposed structure for a compound with higher confidence by correlating, as much as possible, fragment ions in the MS/MS spectrum with plausible substructures. The correlation score gives an indication how likely the MS/MS spectrum supports the identity of the proposed structure.
How do I start the masshunter MSc?

Start the MassHunter MSC in one of two ways: •Double-click the desktop icon, or •Click Start > All Programs > Agilent > Molecular Structure Correlator > Molecular Structure Correlator. The MSC application has two main panes.