Q: How do I run Jasmine on HiFi data from the hg002 trio?

To run Jasmine on HiFi data from the HG002 trio, run the following commands (typically takes about a minute to download and under five minutes to run on a modern desktop): The output of merged.vcf should then exactly match the contents of HG002Trio_HiFi.merged.vcf.

Q: How do I run Jasmine from the source?

After building the jar file, Jasmine can be run with the executable file Jasmine , which will be in the main folder of this repository if building from source, or in the condabin folder if installed through conda. Running it with no parameters will print a usage menu describing the required and optional arguments.

Q: What is Iris in Jasmine and how to use it?

When running Jasmine , one of the preprocessing options is to run Iris, a tool which refines the sequences and breakpoints of insertions in datasets with high-error reads. Iris depends on samtools, minimap2, and racon by default, which can be installed separately and either added to your path or pointed to with the iris_args parameter.

Q: What is Jasmine JS?

What Is Jasmine JS? Jasmine is a framework for unit testing JavaScript. It’s open source and has nearly 15,000 stars on GitHub. Its popularity among developers means that it has a strong community and documentation available when you get stuck. Angular developers especially favor Jasmine because Jasmine is included natively in Angular projects.

Q: How do I install Jasmine on my local box?

To install Jasmine standalone on your local box (where {#.#.#} below is substituted by the release number downloaded): Download the standalone distribution for your desired release from the releases page Create a Jasmine directory in your project - mkdir my-project/ Jasmine

Q: How do I run a test in Jasmine?

Now run tests by simply running Jasmine in the command line, instead of using the specRunner.html. The tests will run in the terminal. The test should fail because it can’t find the code for helloWorld (). To make the test pass, let’s export the code so we can use it in the test file. Back in src/helloWorld.js:

Question 1

How do I run Jasmine on HiFi data from the hg002 trio?

Accepted Answer

To run Jasmine on HiFi data from the HG002 trio, run the following commands (typically takes about a minute to download and under five minutes to run on a modern desktop): The output of merged.vcf should then exactly match the contents of HG002Trio_HiFi.merged.vcf.

Question 2

How do I run Jasmine from the source?

Accepted Answer

After building the jar file, Jasmine can be run with the executable file Jasmine, which will be in the main folder of this repository if building from source, or in the condabin folder if installed through conda. Running it with no parameters will print a usage menu describing the required and optional arguments.

Question 3

What is Iris in Jasmine and how to use it?

Accepted Answer

When running Jasmine, one of the preprocessing options is to run Iris, a tool which refines the sequences and breakpoints of insertions in datasets with high-error reads. Iris depends on samtools, minimap2, and racon by default, which can be installed separately and either added to your path or pointed to with the iris_args parameter.

Question 4

Can Jasmine be used to merge sv calls?

Accepted Answer

The output of merged.vcf should then exactly match the contents of HG002Trio_HiFi.merged.vcf. Jasmine is offered as standalone software and will accurately merge SV calls from any SV callers, including short-read callers.

Question 5

What is&#160;Jasmine JS?

Accepted Answer

What Is Jasmine JS? Jasmine is a framework for unit testing JavaScript. It’s open source and has nearly 15,000 stars on GitHub. Its popularity among developers means that it has a strong community and documentation available when you get stuck. Angular developers especially favor Jasmine because Jasmine is included natively in Angular projects.

Question 6

What is the unit testing framework for Jasmine?

Accepted Answer

It is heavily influenced by other unit testing frameworks, such as ScrewUnit, JSSpec, JSpec, and RSpec. The developers at Pivotal Labs for Jasmine previously developed a similar unit testing framework called JsUnit before active development of Jasmine.

Question 7

How do I install Jasmine on my local box?

Accepted Answer

To install Jasmine standalone on your local box (where {#.#.#} below is substituted by the release number downloaded): Download the standalone distribution for your desired release from the releases page Create a Jasmine directory in your project - mkdir my-project/Jasmine

Question 8

How do I run a test in Jasmine?

Accepted Answer

Now run tests by simply running Jasmine in the command line, instead of using the specRunner.html. The tests will run in the terminal. The test should fail because it can’t find the code for helloWorld (). To make the test pass, let’s export the code so we can use it in the test file. Back in src/helloWorld.js:

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